PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485418
Common NameARALYDRAFT_485418
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 447aa    MW: 47469.9 Da    PI: 10.0272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485418genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055779123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C+k F r  nL+ H r H
   485418 57 FVCEICNKGFQRDQNLQLHRRGH 79
             89*******************88 PP

2zf-C2H211.40.00098133155123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC +C+k +  +s+ k H + +
   485418 133 WKCDKCSKKYAVQSDWKAHSKIC 155
              58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.13E-75679No hitNo description
Gene3DG3DSA:3.30.160.601.4E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PfamPF121716.9E-55779IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035526098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.13E-7128153No hitNo description
SMARTSM00355150133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSIL STGKSTGKKK RNLPGMPDPE SEVIALSPKT LLATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQKSN KEVKKKVYVC PEVSCVHHDP SRALGDLTGI  120
KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTKEY KCDCGTLFSR RDSFITHRAF  180
CDALAEESAR SHNQSKKRNP DILTRQKPVP DPIPAPVDTD QSAKIISSST LTIKQSESPK  240
TPPEIVQEAP KPTGVNVVTR NGVFEGLFES SSASPSIYTT SSSSPSLFAP SSSIEPISLG  300
LSTSHGSSFL GSNRFQPQPA MSATALLQKA AQMGASSSGG SLLRGLGIVS STSTSMDAIV  360
PHGLGLGLPC GGESSSGLKE LMMGNSSVFG PKQTTLDFLG LGRAVGNGNG PSNGLSALVG  420
GSSGIDMAKT FGSGEFSGKD ISRRKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269330.0AK226933.1 Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08.
GenBankBT0149470.0BT014947.1 Arabidopsis thaliana At3g50700 gene, complete cds.
GenBankBT0158360.0BT015836.1 Arabidopsis thaliana At3g50700 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876042.10.0ATIDD2-DOMAIN 2
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLD7LTH60.0D7LTH6_ARALL; ATIDD2-DOMAIN 2
STRINGfgenesh2_kg.5__1410__AT3G50700.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2